{ "_id": "6a12a35facfb0bcc41d12604", "Package": "fluxfixer", "Type": "Package", "Title": "Advanced Framework for Sap Flow Data Post-Process", "Version": "1.1.0.9000", "Authors@R": "person(\"Yoshiaki\", \"Hata\", email = \"yoshiakihata0806@gmail.com\",\nrole = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7703-0863\"))", "Maintainer": "Yoshiaki Hata ", "Description": "Provides a flexible framework for post-processing thermal\ndissipation sap flow data using statistical methods and machine\nlearning. This framework includes anomaly correction, outlier\nremoval, gap-filling, trend removal, signal damping correction,\nand sap flux density calculation. The functions in this package\ncan also apply to other time series with various artifacts.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "URL": "https://github.com/yhata86/fluxfixer,\nhttps://yhata86.github.io/fluxfixer/", "BugReports": "https://github.com/yhata86/fluxfixer/issues", "Config/testthat/edition": "3", "Collate": "'utils.R' 'calc_dtmax.R' 'calc_fd.R'\n'construct_randomforest.R' 'datasets.R' 'fluxfixer-package.R'\n'remove_statistical_outlier.R' 'run_fluxfixer.R' 'utils-pipe.R'", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://yhata86.r-universe.dev", "Date/Publication": "2026-05-24 05:48:02 UTC", "RemoteUrl": "https://github.com/yhata86/fluxfixer", "RemoteRef": "HEAD", "RemoteSha": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 06:51:14 UTC", "User": "root" }, "Author": "Yoshiaki Hata [aut, cre, cph] (ORCID:\n)", "MD5sum": "0bd5be8e2d3a566d5f9abd8f048f9e59", "_user": "yhata86", "_type": "src", "_file": "fluxfixer_1.1.0.9000.tar.gz", "_fileid": "ea780a2eb9c4665815297a87bf58ab1ab9de296aa277b21e68313f6d0388fb2e", "_filesize": 1725411, "_sha256": "ea780a2eb9c4665815297a87bf58ab1ab9de296aa277b21e68313f6d0388fb2e", "_created": "2026-05-24T06:51:14.000Z", "_published": "2026-05-24T07:06:06.980Z", "_distro": "noble", "_jobs": [ { "job": 77578482900, "time": 221, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183036797" }, { "job": 77578482888, "time": 216, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183036330" }, { "job": 77578482905, "time": 186, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183103645" }, { "job": 77578482901, "time": 170, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183096787" }, { "job": 77578333492, "time": 173, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183014160" }, { "job": 77578482884, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183026167" }, { "job": 77578482903, "time": 165, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183031226" }, { "job": 77578482897, "time": 239, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183038730" }, { "job": 77578482889, "time": 163, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183031072" } ], "_buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/yhata86/fluxfixer", "_commit": { "id": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "author": "yhata86 ", "committer": "yhata86 ", "message": "add citation\n", "time": 1779601682 }, "_maintainer": { "name": "Yoshiaki Hata", "email": "yoshiakihata0806@gmail.com", "orcid": "0000-0001-7703-0863" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "dplyr", "version": ">= 1.0.7", "role": "Imports" }, { "package": "gsignal", "version": ">= 0.3-4", "role": "Imports" }, { "package": "lubridate", "version": ">= 1.7.9", "role": "Imports" }, { "package": "magrittr", "version": ">= 2.0.3", "role": "Imports" }, { "package": "ranger", "version": ">= 0.13.1", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.3", "role": "Imports" }, { "package": "stats", "version": ">= 4.0.3", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.1.4", "role": "Imports" }, { "package": "tidyselect", "version": ">= 1.2.0", "role": "Imports" }, { "package": "xts", "version": ">= 0.12.1", "role": "Imports" }, { "package": "zoo", "version": ">= 1.8-8", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "yhata86", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-22", "n": 1 }, { "week": "2025-32", "n": 1 }, { "week": "2025-52", "n": 1 }, { "week": "2026-02", "n": 5 }, { "week": "2026-03", "n": 3 }, { "week": "2026-04", "n": 12 }, { "week": "2026-05", "n": 9 }, { "week": "2026-06", "n": 1 }, { "week": "2026-07", "n": 1 }, { "week": "2026-15", "n": 10 }, { "week": "2026-17", "n": 2 }, { "week": "2026-21", "n": 1 } ], "_tags": [ { "name": "v1.0.0", "date": "2026-01-28" }, { "name": "v1.1.0", "date": "2026-04-11" } ], "_stars": 0, "_contributors": [ { "user": "yhata86", "count": 39, "uuid": 61131601 } ], "_userbio": { "uuid": 61131601, "type": "user", "name": "yhata86" }, "_downloads": { "count": 502, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fluxfixer" }, "_devurl": "https://github.com/yhata86/fluxfixer", "_pkgdown": "https://yhata86.github.io/fluxfixer/", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fluxfixer.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/yhata86/fluxfixer", "_realowner": "yhata86", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2026-02-02" }, { "version": "1.1.0", "date": "2026-04-11" } ], "_exports": [ "%>%", "calc_dtmax", "calc_fd", "calc_ref_stats", "calc_sw_in_toa", "check_absolute_limits", "fill_gaps", "filter_highfreq_noise", "interpret_qc", "modify_short_drift", "remove_manually", "remove_rf_outlier", "remove_zscore_outlier", "retrieve_ts", "run_fluxfixer" ], "_datasets": [ { "name": "dt_gf", "title": "Quality-controlled and gap-filled dT time series", "object": "dt_gf", "class": [ "data.frame" ], "fields": [ "time", "dt", "p", "sw_in", "ta", "vpd", "ws", "swc" ], "rows": 17520, "table": true, "tojson": true }, { "name": "dt_noisy", "title": "Raw dT time series with various artifacts", "object": "dt_noisy", "class": [ "data.frame" ], "fields": [ "time", "dt", "p", "sw_in", "ta", "vpd", "ws", "swc" ], "rows": 17520, "table": true, "tojson": true }, { "name": "dtmax", "title": "dTmax time series estimated by multiple methods", "object": "dtmax", "class": [ "data.frame" ], "fields": [ "time", "dtmax_sp", "dtmax_pd", "dtmax_mw", "dtmax_dr", "dtmax_ed" ], "rows": 17520, "table": true, "tojson": true } ], "_help": [ { "page": "calc_dtmax", "title": "Calculate dTmax by various methods", "topics": [ "calc_dtmax" ] }, { "page": "calc_fd", "title": "Calculate sap flux density time series", "topics": [ "calc_fd" ] }, { "page": "calc_ref_stats", "title": "Define reference values of average and standard deviation", "topics": [ "calc_ref_stats" ] }, { "page": "calc_sw_in_toa", "title": "Calculate global solar radiation time series at TOA", "topics": [ "calc_sw_in_toa" ] }, { "page": "check_absolute_limits", "title": "Remove outliers by absolute limits", "topics": [ "check_absolute_limits" ] }, { "page": "dt_gf", "title": "Quality-controlled and gap-filled dT time series", "topics": [ "dt_gf" ] }, { "page": "dt_noisy", "title": "Raw dT time series with various artifacts", "topics": [ "dt_noisy" ] }, { "page": "dtmax", "title": "dTmax time series estimated by multiple methods", "topics": [ "dtmax" ] }, { "page": "fill_gaps", "title": "Fill missing values with a random forest model", "topics": [ "fill_gaps" ] }, { "page": "filter_highfreq_noise", "title": "Filter high frequency noise by Gaussian filter", "topics": [ "filter_highfreq_noise" ] }, { "page": "interpret_qc", "title": "Convert the decimal QC flag into a human-interpretable 10-digit binary", "topics": [ "interpret_qc" ] }, { "page": "modify_short_drift", "title": "Modify short-term drifts", "topics": [ "modify_short_drift" ] }, { "page": "remove_manually", "title": "Remove error values manually", "topics": [ "remove_manually" ] }, { "page": "remove_rf_outlier", "title": "Remove outliers detected by a random forest model", "topics": [ "remove_rf_outlier" ] }, { "page": "remove_zscore_outlier", "title": "Remove outliers by Z-score time series", "topics": [ "remove_zscore_outlier" ] }, { "page": "retrieve_ts", "title": "Retrieve time series in its original units", "topics": [ "retrieve_ts" ] }, { "page": "run_fluxfixer", "title": "Run all quality control processes automatically", "topics": [ "run_fluxfixer" ] } ], "_pkglogo": "https://github.com/yhata86/fluxfixer/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/yhata86/fluxfixer/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "dplyr", "generics", "glue", "gsignal", "lattice", "lifecycle", "lubridate", "magrittr", "Matrix", "pillar", "pkgconfig", "pracma", "purrr", "R6", "ranger", "Rcpp", "RcppEigen", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xts", "zoo" ], "_vignettes": [ { "source": "fluxfixer.Rmd", "filename": "fluxfixer.html", "title": "fluxfixer", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Workflow", "Data preparation", "For thermal dissipation sap flow time series", "For time series unrelated to thermal dissipation sap flow", "Automatic execution of all processes", "Step-by-step executions of each process", "Data Input", "Anomaly correction", "Absolute limit test", "Short-term drift correction (optional)", "High-frequency noise removal (optional)", "Outlier removal", "Z-score outlier removal", "Random forest outlier removal", "Gap-filling", "Time series retrieval", "Zero-flow conditions determination", "Sap flux density calculation", "References" ], "created": "2026-01-25 14:43:55", "modified": "2026-05-24 05:48:02", "commits": 6 } ], "_score": 4.778151250383644, "_indexed": true, "_nocasepkg": "fluxfixer", "_universes": [ "yhata86" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0.9000", "date": "2026-05-24T06:53:22.000Z", "distro": "noble", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "97b2ab8140612fc8a4f0cfa035cf2e6f1009a40a8a05370683d312f46ffefd5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0.9000", "date": "2026-05-24T06:53:22.000Z", "distro": "noble", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "bd0d583b78e07af0d479287c28a36cd94837d1b47a953b5e324d93cb4d0a7b82", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0.9000", "date": "2026-05-24T07:04:11.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "4f1813fd158756e2abc48acd464edbc7cb4d89f03f0bad804bfac2b1734932fd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0.9000", "date": "2026-05-24T07:03:16.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "ac3ff1f85fc37bb9de41e071af5e8d1ef72568410f6214ab0e3e4b61453d84d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0.9000", "date": "2026-05-24T06:53:23.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "306d79dd8ca340cb3e77f0bfc2dc7b02452a0937be95c0577af8fca22791af13", "status": "success", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.7.0", "os": "win", "version": "1.1.0.9000", "date": "2026-05-24T06:52:21.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "dd30d4345154e95aa949d3f7fbcfb0f4ac78b7e51c573e11ac2710148601cc08", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.5.3", "os": "win", "version": "1.1.0.9000", "date": "2026-05-24T06:52:26.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "a2954c4f591df44222e102ad7c0d46a4fe11e64941c4b91c89134df77b6b3ee2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" }, { "r": "4.6.0", "os": "win", "version": "1.1.0.9000", "date": "2026-05-24T06:52:35.000Z", "commit": "9d61752cd26c22f897427d6c89868b4c9a849d9e", "fileid": "6d3173bb28d8529a57a0af57295a78a44206f54626a3ded38d69c415e08f10f0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yhata86/actions/runs/26354384265" } ] }